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If using a Mac, the easiest way to download and install kallisto is via brew with the commands:

Alternatively, with conda installed and the bioconda channel activated, kallisto can be installed with:

The kallisto bioconda installation will work with 64 bit linux or Mac OS. More details are available at the kallisto bioconda page.

kllisto can also be installed on FreeBSD via the FreeBSD ports system using

kallisto binaries for Mac OS X, NetBSD, RHEL/CentOS and SmartOS can be installed on most POSIX platforms using pkgsrc:

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For other operating systems download executables or source from the links below and follow the provided instructions. Note that prebuilt kallisto indices from the human transcriptome and many model organism transcriptomes are available from the kallisto transcriptome indices page.

Releases

The kallisto GitHub repository is here.

Licence

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kallisto is distributed under the BSD 2-clause “Simplified” License: